Select the
input-file:
Files must contain prealigned sequence data.
Files can be submitted in AFA (.afa), FASTA (.mpfa, .fna, .fsa, .fa,
.fas., .fasta.), CLUSTAL (.clustal, .aln) or NEXUS (.nxs, .nex, .nexus)
format.
Enter Parameters for vdiff:
Group-output
Select the
input-file:
Files must contain prealigned sequence data.
Files can be submitted in AFA (.afa), FASTA (.mpfa, .fna, .fsa, .fa,
.fas., .fasta.), CLUSTAL (.clustal, .aln) or NEXUS (.nxs, .nex, .nexus)
format.
Select the
input-file:
Files must contain prealigned sequence data.
Files can be submitted in AFA (.afa), FASTA (.mpfa, .fna, .fsa, .fa,
.fas., .fasta.), CLUSTAL (.clustal, .aln) or NEXUS (.nxs, .nex, .nexus)
format.
Enter Parameters for the singlestrand-analysis:
Classmode - which classes shall be analysed?
Class 1 (CGN)
Class 2 (CHG)
Class 3 (CHH)
Mutation search, shall we use rvdiff to find differences of master and clone (except C->T)?
Mutation search
Select the
input-file:
Files must contain prealigned sequence data.
Files can be submitted in AFA (.afa), FASTA (.mpfa, .fna, .fsa, .fa,
.fas., .fasta.), CLUSTAL (.clustal, .aln) or NEXUS (.nxs, .nex, .nexus)
format.
Enter Parameters for the doublestrand-analysis:
Hair-Pin-Linker:
Bottomstrandfirst - check if the format of the input file is B-HPL-T (if format is T-HPL-B do not check)
Bottomfirst
Classmode - which classes shall be analysed?
Class 1 (CGN)
Class 2 (CHG)
Class 3 (CHH)
Mutation search, shall we use rvdiff to find differences of master and clone (except C->T)?
Mutation search
Select the
input-file for the forward/top-strand:
Select the
input-file for the reverse/bottom-strand:
Files must contain prealigned sequence data.
Files can be submitted in AFA (.afa), FASTA (.mpfa, .fna, .fsa, .fa,
.fas., .fasta.), CLUSTAL (.clustal, .aln) or NEXUS (.nxs, .nex, .nexus)
format.
Enter Parameters for the twostrand-analysis:
Right-aligned - check if your data is right aligned (otherwise left-aligned). Don't care if your two inputfiles are of inequal length.
Right-aligned
Classmode - which classes shall be analysed?
Class 1 (CGN)
Class 2 (CHG)
Class 3 (CHH)
Mutation search, shall we use rvdiff to find differences of master and clone (except C->T)?
Mutation search